nf-core/hgtseq

A pipeline to investigate horizontal gene transfer from NGS data

bwa-membwa-mem2fastqcgenomics-visualizationggbiohorizontal-gene-transferkraken2kronamultiqcngssamtoolstaxonomiestidyverse

Launch version 1.1.0 https://github.com/nf-core/hgtseq

Version history

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`Added`

#31 - Fixed issue where single_unmapped reads also include both_unmapped reads, by creating a local module with two steps samtools flag filtering

`Fixed`

#31 - Sync TEMPLATE with tools 2.8 and all nf-core/modules updated

`Dependencies`

Dependency	Old version	New version
`samtools`	1.15.1	1.17
`multiqc`	1.13	1.14

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Initial release of nf-core/hgtseq, created with the nf-core template.